Transcript: LINC01595:4

Basic information

LNCipedia transcript ID: LINC01595:4 
LNCipedia gene ID: LINC01595
Location (hg19): chr19:48366965-48367756
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 414 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000555406.1; CTD-3098H1.2-002; OTTHUMT00000409817.1
Alternative gene names: ENSG00000259108.1; CTD-3098H1.2; OTTHUMG00000170611.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.7472 non-coding 
CPAT coding probability 0.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01595:4 no no no no

Available literature

  1. Ma (2015), Co‑expression of the carbamoyl‑phosphate synthase 1 gene and its long non‑coding RNA correlates with poor prognosis of patients with intrahepatic cholangiocarcinoma., Mol Med Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SULT2A1-1:2
4.0 LINC01595:4
4.1 LINC01595:4
5.0 LINC01595:4
5.1 LINC01595:4
5.2 LINC01595:4