Transcript: LINC01602:1

Basic information

LNCipedia transcript ID: LINC01602:1 
HGNC Gene Symbol: LINC01602    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1602
Ensembl Gene ID: ENSG00000205293
Ensembl Transcript ID: ENST00000522992
RefSeq ID: NR_130934
Location (hg19): chr8:58890917-58896685
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2109 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000522992; ENST00000522992.1; RP11-1112C15.1-001; OTTHUMT00000378087.1; NONHSAT126764; NR_130934.1
Alternative gene names: ENSG00000205293; RP11-1112C15.1; ENSG00000205293.3; OTTHUMG00000164281.1; LINC01602; T1560


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.9558 non-coding 
CPAT coding probability 1.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01602:1 no no no no

Available literature

  1. Hishinuma (2004), TTF-2 stimulates expression of 17 genes, including one novel thyroid-specific gene which might be involved in thyroid development., Mol. Cell. Endocrinol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM110B-2:1
3.1 lnc-FAM110B-2:1
4.0 LINC01602:1
4.1 LINC01602:1
5.0 LINC01602:1
5.1 LINC01602:1
5.2 LINC01602:1