Transcript: LINC01605:7

Basic information

LNCipedia transcript ID: LINC01605:7 
HGNC Gene Symbol: LINC01605    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1605
Ensembl Gene ID: ENSG00000253161
Ensembl Transcript ID: ENST00000522718
Location (hg19): chr8:37278859-37351431
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1093 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000522718.1; RP11-150O12.1-003; OTTHUMT00000376674.2; NONHSAT126039; ENST00000522718.5
Alternative gene names: ENSG00000253161.1; RP11-150O12.1; OTTHUMG00000163996.2; ENSG00000253161.5; LINC01605; TCONS_00014973


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -77.051 non-coding 
CPAT coding probability 7.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01605:7 no no no no

Available literature

  1. Forrest (2018), Colon Cancer-Upregulated Long Non-Coding RNA lincDUSP Regulates Cell Cycle Genes and Potentiates Resistance to Apoptosis., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-150O12.6.1-1:5
4.0 LINC01605:7
4.1 LINC01605:7
5.0 LINC01605:7
5.1 LINC01605:7
5.2 LINC01605:7