Transcript: LINC01611:10

Basic information

LNCipedia transcript ID: LINC01611:10 
LNCipedia gene ID: LINC01611
Location (hg19): chr6:85130746-85293560
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 847 bp
Exons: 7
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000089122.1|MICT00000307476.1
Alternative gene names: RP1-90L14.1; TCONS_l2_00025430


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -3.6441 non-coding 
CPAT coding probability 3.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01611:10 no no no no

Available literature

  1. Awata (2014), A genome-wide association study for diabetic retinopathy in a Japanese population: potential association with a long intergenic non-coding RNA., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC01611:10
5.0 LINC01611:10
5.1 LINC01611:10
5.2 LINC01611:10