Transcript: LINC01611:2

Basic information

LNCipedia transcript ID: LINC01611:2 
HGNC Gene Symbol: LINC01611    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1611
Ensembl Gene ID: ENSG00000231776
Ensembl Transcript ID: ENST00000428896
Location (hg19): chr6:85130766-85184647
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 477 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000428896.1; RP1-90L14.1-002; OTTHUMT00000041372.1; NONHSAT113813
Alternative gene names: ENSG00000231776.1; RP1-90L14.1; OTTHUMG00000015125.1; ENSG00000231776.5; LINC01611; TCONS_l2_00025430


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -241.721 non-coding 
CPAT coding probability 0.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01611:2 no no no no

Available literature

  1. Awata (2014), A genome-wide association study for diabetic retinopathy in a Japanese population: potential association with a long intergenic non-coding RNA., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA1009-1:2
4.0 LINC01611:2
4.1 LINC01611:2
5.0 LINC01611:2
5.1 LINC01611:2
5.2 LINC01611:2