Transcript: LINC01614:3

Basic information

LNCipedia transcript ID: LINC01614:3 
LNCipedia gene ID: LINC01614
Ensembl Gene ID: ENSG00000237525
Ensembl Transcript ID: ENST00000417485
Location (hg19): chr2:216410921-216578618
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1642 bp
Exons: 8
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000417485; ENST00000417485.2; AC012668.2-001; OTTHUMT00000337311.2; NONHSAT076764; ENST00000417485.6
Alternative gene names: ENSG00000237525; AC012668.2; ENSG00000237525.2; OTTHUMG00000154833.2; ENSG00000237525.6; LCAL4; TCONS_00003105; AC012668.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -167.0729 non-coding 
CPAT coding probability 3.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01614:3 no no no no

Available literature

  1. White (2014), Transcriptome sequencing reveals altered long intergenic non-coding RNAs in lung cancer., Genome Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATIC-6:3
3.1 lnc-ATIC-7:2
4.0 LINC01614:3
4.1 LINC01614:3
5.0 LINC01614:3
5.1 LINC01614:3
5.2 LINC01614:3