Transcript: LINC01615:3

Basic information

LNCipedia transcript ID: LINC01615:3 
HGNC Gene Symbol: LINC01615    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1615
Ensembl Gene ID: ENSG00000223485
Ensembl Transcript ID: ENST00000439703
Location (hg19): chr6:169558187-169563019
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 647 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011622; ENST00000439703; ENST00000439703.1; RP11-417E7.1-001; OTTHUMT00000043210.2; NONHSAT116182
Alternative gene names: XLOC_005935; linc-DACT2-1; ENSG00000223485; RP11-417E7.1; ENSG00000223485.1; OTTHUMG00000016054.2; ENSG00000223485.2; LINC01615;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -65.1523 non-coding 
CPAT coding probability 3.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01615:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-THBS2-3:2
3.1 lnc-THBS2-3:2
4.0 LINC01615:3
4.1 LINC01615:3
5.0 LINC01615:3
5.1 LINC01615:3
5.2 LINC01615:3