Transcript: LINC01624:3

Basic information

LNCipedia transcript ID: LINC01624:3 
HGNC Gene Symbol: LINC01624    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1624
Ensembl Gene ID: ENSG00000227508
Ensembl Transcript ID: ENST00000422894
Location (hg19): chr6:170584462-170588557
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 318 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000422894; TCONS_00011425; ENST00000422894.1; RP5-894D12.3-002; OTTHUMT00000043253.1; NONHSAT116266; ENST00000422894.5
Alternative gene names: ENSG00000227508; XLOC_005564; linc-FAM120B-1; RP5-894D12.3; ENSG00000227508.1; OTTHUMG00000016077.1; ENSG00000227508.2; ENSG00000227508.6; LINC01624; TCONS_00011425


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -39.3083 non-coding 
CPAT coding probability 0.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01624:3 no no no no

Available literature

  1. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM120B-1:1
3.1 lnc-FAM120B-2:1
4.0 LINC01624:3
4.1 LINC01624:3
5.0 LINC01624:3
5.1 LINC01624:3
5.2 LINC01624:3