Transcript: LINC01635:15

Basic information

LNCipedia transcript ID: LINC01635:15 
LNCipedia gene ID: LINC01635
Location (hg19): chr1:22350487-22351461
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 615 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00000481; ENST00000455966; ENST00000455966.1; RP1-224A6.3-001; OTTHUMT00000007790.1; NONHSAT001455
Alternative gene names: XLOC_000732; linc-HSPG2; ENSG00000228397; RP1-224A6.3; ENSG00000228397.1; OTTHUMG00000002754.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -166.3171 non-coding 
CPAT coding probability 0.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01635:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HSPG2-1:3
3.1 lnc-HSPG2-1:3
4.0 lnc-HSPG2-1:3
4.1 lnc-HSPG2-1:3
5.0 lnc-HSPG2-1:3
5.1 LINC01635:8
5.2 LINC01635:15