Transcript: LINC01645:4

Basic information

LNCipedia transcript ID: LINC01645:4 
HGNC Gene Symbol: LINC01645    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1645
Ensembl Gene ID: ENSG00000224968
Ensembl Transcript ID: ENST00000451341
Location (hg19): chr1:177320722-177335408
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 491 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000451341; ENST00000451341.1; RP1-35C21.1-001; OTTHUMT00000098153.1; NONHSAT007792; FPKM1_group_1730_transcript_1
Alternative gene names: ENSG00000224968; RP1-35C21.1; ENSG00000224968.1; OTTHUMG00000040861.1; LINC01645


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -326.0743 non-coding 
CPAT coding probability 13.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01645:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM5B-1:1
3.1 lnc-FAM5B-1:1
4.0 lnc-FAM5B-1:1
4.1 lnc-FAM5B-1:1
5.0 lnc-FAM5B-1:1
5.1 LINC01645:2
5.2 LINC01645:4