Transcript: LINC01648:5

Basic information

LNCipedia transcript ID: LINC01648:5 
LNCipedia gene ID: LINC01648
Location (hg19): chr1:30486799-30510459
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2519 bp
Exons: 7
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00000496; ENST00000445180; ENST00000445180.1; RP11-111I12.1-001; OTTHUMT00000010417.1; NONHSAT002039
Alternative gene names: XLOC_000766; linc-MECR-2; ENSG00000233399; RP11-111I12.1; ENSG00000233399.1; OTTHUMG00000003683.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.8112 non-coding 
CPAT coding probability 7.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01648:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MATN1-3:1
3.1 lnc-MATN1-3:1
4.0 lnc-MATN1-3:1
4.1 lnc-MATN1-3:1
5.0 lnc-MATN1-3:1
5.1 LINC01648:2
5.2 LINC01648:5