Transcript: LINC01648:6

Basic information

LNCipedia transcript ID: LINC01648:6 
HGNC Gene Symbol: LINC01648    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1648
Ensembl Gene ID: ENSG00000233399
Ensembl Transcript ID: ENST00000445180
RefSeq ID: NR_110790
Location (hg19): chr1:30486799-30510459
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1519 bp
Exons: 7
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT002040; ENST00000445180.2; NR_110790; NR_110790.1
Alternative gene names: ENSG00000233399.2; RP11-111I12.1; LINC01648; LOC101929406


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.8112 non-coding 
CPAT coding probability 2.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01648:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MATN1-3:3
4.0 lnc-MATN1-3:3
4.1 lnc-MATN1-3:3
5.0 lnc-MATN1-3:3
5.1 LINC01648:3
5.2 LINC01648:6