Transcript: LINC01656:3

Basic information

LNCipedia transcript ID: LINC01656:3 
HGNC Gene Symbol: LINC01656    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1656
Ensembl Gene ID: ENSG00000232655
Ensembl Transcript ID: ENST00000415702
RefSeq ID: NR_109966
Location (hg19): chr22:44839207-44840668
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 630 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00029433; ENST00000415702; ENST00000415702.1; CTA-397C4.2-001; OTTHUMT00000318225.1; NONHSAT087157; NR_109966; NR_109966.1
Alternative gene names: XLOC_014265; linc-PRR5-2; ENSG00000232655; CTA-397C4.2; ENSG00000232655.1; OTTHUMG00000150468.1; LINC01656; LOC101927526


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -51.9452 non-coding 
CPAT coding probability 0.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01656:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP1-32I10.10.1-3:1
3.1 lnc-RP1-32I10.10.1-3:1
4.0 lnc-RP1-32I10.10.1-3:1
4.1 lnc-RP1-32I10.10.1-3:1
5.0 lnc-RP1-32I10.10.1-3:1
5.1 LINC01656:2
5.2 LINC01656:3