Transcript: LINC01658:6

Basic information

LNCipedia transcript ID: LINC01658:6 
HGNC Gene Symbol: LINC01658    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1658
Ensembl Gene ID: ENSG00000178248
Ensembl Transcript ID: ENST00000320372
Location (hg19): chr22:23804273-23829167
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1578 bp
Exons: 12
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000320372; ENST00000320372.9; AP000345.1-001; OTTHUMT00000319544.1
Alternative gene names: ENSG00000178248; AP000345.1; ENSG00000178248.10; OTTHUMG00000150669.1; ENSG00000178248.11; LINC01658


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 45.1954 non-coding 
CPAT coding probability 99.81% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01658:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IGLL1-2:1
3.1 lnc-IGLL1-2:1
4.0 lnc-IGLL1-2:1
4.1 lnc-IGLL1-2:1
5.0 lnc-IGLL1-2:1
5.1 LINC01658:2
5.2 LINC01658:6