Transcript: LINC01671:10

Basic information

LNCipedia transcript ID: LINC01671:10 
LNCipedia gene ID: LINC01671
Location (hg19): chr21:44019387-44021829
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1621 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT082341
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.1518 non-coding 
CPAT coding probability 12.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01671:10 no no no no

Available literature

  1. Wang (2018), Identification of differential expression lncRNAs in gastric cancer using transcriptome sequencing and bioinformatics analyses., Mol Med Rep
  2. Lin (2016), Primate-specific oestrogen-responsive long non-coding RNAs regulate proliferation and viability of human breast cancer cells., Open Biol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RSPH1-2:4
4.0 lnc-RSPH1-2:4
4.1 lnc-RSPH1-2:4
5.0 lnc-RSPH1-2:4
5.1 LINC01671:6
5.2 LINC01671:10