Transcript: LINC01672:13

Basic information

LNCipedia transcript ID: LINC01672:13 
HGNC Gene Symbol: LINC01672    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1672
Ensembl Gene ID: ENSG00000228750
Ensembl Transcript ID: ENST00000432429
Location (hg19): chr1:6784697-6787468
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1686 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000147; ENST00000432429; ENST00000432429.1; RP11-242F24.1-001; OTTHUMT00000004978.1; NONHSAT000679; ENST00000432429.5
Alternative gene names: XLOC_000041; linc-CAMTA1; ENSG00000228750; RP11-242F24.1; ENSG00000228750.1; OTTHUMG00000001785.1; ENSG00000228750.6; LINC01672


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.6284 non-coding 
CPAT coding probability 1.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01672:13 no no no no

Available literature

  1. Li (2018), Novel long noncoding RNA NMR promotes tumor progression via NSUN2 and BPTF in esophageal squamous cell carcinoma., Cancer Lett.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CAMTA1-1:1
3.1 lnc-CAMTA1-1:2
4.0 lnc-CAMTA1-1:2
4.1 lnc-CAMTA1-1:2
5.0 lnc-CAMTA1-1:2
5.1 LINC01672:3
5.2 LINC01672:13