Transcript: LINC01672:18

Basic information

LNCipedia transcript ID: LINC01672:18 
LNCipedia gene ID: LINC01672
RefSeq ID: NR_104620
Location (hg19): chr1:6784805-6790072
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 399 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_104620; NR_104620.1
Alternative gene names: LOC100505887


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -203.3046 non-coding 
CPAT coding probability 1.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01672:18 no no no no

Available literature

  1. Li (2018), Novel long noncoding RNA NMR promotes tumor progression via NSUN2 and BPTF in esophageal squamous cell carcinoma., Cancer Lett.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CAMTA1-1:6
4.0 lnc-CAMTA1-1:6
4.1 lnc-CAMTA1-1:6
5.0 lnc-CAMTA1-1:6
5.1 LINC01672:8
5.2 LINC01672:18