Transcript: LINC01676:23

Basic information

LNCipedia transcript ID: LINC01676:23 
LNCipedia gene ID: LINC01676
Location (hg19): chr1:106132315-106161581
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 447 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001618; NONHSAT004919
Alternative gene names: XLOC_000948; linc-AMY1A-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.1804 non-coding 
CPAT coding probability 1.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01676:23 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AMY1B-2:1
3.1 lnc-AMY1B-3:1
4.0 lnc-AMY1B-3:1
4.1 lnc-AMY1B-3:1
5.0 lnc-AMY1B-3:1
5.1 LINC01676:2
5.2 LINC01676:23