Transcript: LINC01676:25

Basic information

LNCipedia transcript ID: LINC01676:25 
LNCipedia gene ID: LINC01676
Location (hg19): chr1:106144776-106161557
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1824 bp
Exons: 4
Sources: Broad Institute
Alternative transcript names: TCONS_00000093
Alternative gene names: XLOC_000948; linc-AMY1A-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.2968 non-coding 
CPAT coding probability 1.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01676:25 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AMY1B-2:2
3.1 lnc-AMY1B-3:2
4.0 lnc-AMY1B-3:2
4.1 lnc-AMY1B-3:2
5.0 lnc-AMY1B-3:2
5.1 LINC01676:4
5.2 LINC01676:25