Transcript: LINC01676:26

Basic information

LNCipedia transcript ID: LINC01676:26 
LNCipedia gene ID: LINC01676
RefSeq ID: NR_125954
Location (hg19): chr1:106144774-106161557
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1826 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000435253; ENST00000435253.1; RP11-251P6.1-001; OTTHUMT00000030256.1; NR_125954; NR_125954.1
Alternative gene names: ENSG00000230768; RP11-251P6.1; ENSG00000230768.1; OTTHUMG00000011003.1; LOC101928476


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.2968 non-coding 
CPAT coding probability 1.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01676:26 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AMY1B-2:3
3.1 lnc-AMY1B-3:3
4.0 lnc-AMY1B-3:3
4.1 lnc-AMY1B-3:3
5.0 lnc-AMY1B-3:3
5.1 LINC01676:5
5.2 LINC01676:26