Transcript: LINC01676:30

Basic information

LNCipedia transcript ID: LINC01676:30 
HGNC Gene Symbol: LINC01676    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1676
Ensembl Gene ID: ENSG00000230768
Ensembl Transcript ID: ENST00000420901
Location (hg19): chr1:106132316-106161540
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 410 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000596; ENST00000420901; ENST00000420901.1; RP11-251P6.1-002; OTTHUMT00000030257.1; NONHSAT004920; ENST00000420901.5
Alternative gene names: XLOC_000948; linc-AMY1A-2; ENSG00000230768; RP11-251P6.1; ENSG00000230768.1; OTTHUMG00000011003.1; ENSG00000230768.3; ENSG00000230768.7; LINC01676


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.1804 non-coding 
CPAT coding probability 1.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01676:30 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AMY1B-2:4
3.1 lnc-AMY1B-3:4
4.0 lnc-AMY1B-3:4
4.1 lnc-AMY1B-3:4
5.0 lnc-AMY1B-3:4
5.1 LINC01676:9
5.2 LINC01676:30