Transcript: LINC01678:21

Basic information

LNCipedia transcript ID: LINC01678:21 
LNCipedia gene ID: LINC01678
Location (hg19): chr21:45578496-45579465
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 540 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00029312; NONHSAT082481
Alternative gene names: XLOC_014110; linc-CSTB-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.5937 non-coding 
CPAT coding probability 6.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01678:21 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ICOSLG-6:5
3.1 lnc-ICOSLG-6:5
4.0 lnc-ICOSLG-6:5
4.1 lnc-ICOSLG-6:5
5.0 lnc-ICOSLG-6:5
5.1 LINC01678:11
5.2 LINC01678:21