Transcript: LINC01683:3

Basic information

LNCipedia transcript ID: LINC01683:3 
HGNC Gene Symbol: LINC01683    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1683
Ensembl Gene ID: ENSG00000233480
Ensembl Transcript ID: ENST00000443479
Location (hg19): chr21:21265593-21272069
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 412 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028878; ENST00000443479; ENST00000443479.1; AP000946.2-001; OTTHUMT00000158341.1; NONHSAT081340
Alternative gene names: XLOC_014017; linc-TMPRSS15-8; ENSG00000233480; AP000946.2; ENSG00000233480.1; OTTHUMG00000074607.1; LINC01683


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -174.9121 non-coding 
CPAT coding probability 2.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01683:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMPRSS15-7:1
3.1 lnc-TMPRSS15-7:1
4.0 lnc-TMPRSS15-7:1
4.1 lnc-TMPRSS15-7:1
5.0 lnc-TMPRSS15-7:1
5.1 LINC01683:2
5.2 LINC01683:3