Transcript: LINC01684:26

Basic information

LNCipedia transcript ID: LINC01684:26 
HGNC Gene Symbol: LINC01684    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1684
Ensembl Gene ID: ENSG00000237484
Ensembl Transcript ID: ENST00000453784
RefSeq ID: NR_135520
Location (hg19): chr21:25801054-25862621
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2908 bp
Exons: 6
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT081449; ENST00000453784.2; NR_135520.1
Alternative gene names: ENSG00000237484.5; AP000476.1; LINC01684; LOC105372751


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.1969 non-coding 
CPAT coding probability 41.68% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01684:26 no no no no

Available literature

  1. Sookoian (2017), Genetic variation in long noncoding RNAs and the risk of nonalcoholic fatty liver disease., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-JAM2-6:5
4.0 lnc-JAM2-6:5
4.1 lnc-JAM2-6:5
5.0 lnc-JAM2-6:5
5.1 LINC01684:11
5.2 LINC01684:26