Transcript: LINC01684:28

Basic information

LNCipedia transcript ID: LINC01684:28 
HGNC Gene Symbol: LINC01684    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1684
Ensembl Gene ID: ENSG00000237484
Ensembl Transcript ID: ENST00000415182
Location (hg19): chr21:25801095-25920256
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2176 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000415182; ENST00000415182.1; AP000476.1-002; OTTHUMT00000171138.1; NONHSAT081453
Alternative gene names: ENSG00000237484; AP000476.1; ENSG00000237484.3; OTTHUMG00000078326.1; ENSG00000237484.5; LINC01684


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -42.5212 non-coding 
CPAT coding probability 20.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01684:28 no no no no

Available literature

  1. Sookoian (2017), Genetic variation in long noncoding RNAs and the risk of nonalcoholic fatty liver disease., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-JAM2-6:4
3.1 lnc-JAM2-6:4
4.0 lnc-JAM2-6:4
4.1 lnc-JAM2-6:4
5.0 lnc-JAM2-6:4
5.1 LINC01684:15
5.2 LINC01684:28