Transcript: LINC01685:6

Basic information

LNCipedia transcript ID: LINC01685:6 
HGNC Gene Symbol: LINC01685    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1685
Ensembl Gene ID: ENSG00000238063
Ensembl Transcript ID: ENST00000634732
Location (hg19): chr1:38940547-38942153
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1239 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000634732.1
Alternative gene names: ENSG00000238063.2; RP11-329N22.1; LINC01685


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -29.6882 non-coding 
CPAT coding probability 0.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01685:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-UTP11L-5:2
4.1 lnc-UTP11L-5:2
5.0 lnc-UTP11L-5:2
5.1 LINC01685:2
5.2 LINC01685:6