Transcript: LINC01689:11

Basic information

LNCipedia transcript ID: LINC01689:11 
LNCipedia gene ID: LINC01689
Location (hg19): chr21:25680005-25725884
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1977 bp
Exons: 9
Sources: Nielsen et al.,2014
Alternative transcript names: l_2180_NR_024027
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.8475 non-coding 
CPAT coding probability 0.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01689:11 no no no no

Available literature

  1. Lanzós (2017), Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MRPL39-9:2
4.0 lnc-MRPL39-9:2
4.1 lnc-MRPL39-9:2
5.0 lnc-MRPL39-9:2
5.1 LINC01689:4
5.2 LINC01689:11