Transcript: LINC01689:8

Basic information

LNCipedia transcript ID: LINC01689:8 
HGNC Gene Symbol: LINC01689    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1689
Ensembl Gene ID: ENSG00000224832
Ensembl Transcript ID: ENST00000642623
Location (hg19): chr21:25676859-25682207
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1140 bp
Exons: 5
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000642623.1
Alternative gene names: ENSG00000224832.2; LINC01689


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 2.2095 non-coding 
CPAT coding probability 0.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01689:8 no no no no

Available literature

  1. Lanzós (2017), Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 LINC01689:8
5.1 LINC01689:8
5.2 LINC01689:8