Transcript: LINC01697:25

Basic information

LNCipedia transcript ID: LINC01697:25 
LNCipedia gene ID: LINC01697
Location (hg19): chr21:29420733-29509930
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1754 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000426534; ENST00000426534.1; AL035610.1-001; OTTHUMT00000171686.1; NONHSAT081587
Alternative gene names: ENSG00000232079; AL035610.1; ENSG00000232079.1; OTTHUMG00000078709.1; ENSG00000232079.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.4425 non-coding 
CPAT coding probability 3.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01697:25 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-USP16-3:2
3.1 lnc-USP16-3:1
4.0 lnc-USP16-3:1
4.1 lnc-USP16-3:1
5.0 lnc-USP16-3:1
5.1 LINC01697:4
5.2 LINC01697:25