Transcript: LINC01702:22

Basic information

LNCipedia transcript ID: LINC01702:22 
LNCipedia gene ID: LINC01702
Location (hg19): chr1:67995313-67998012
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 408 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00000219; ENST00000230113; ENST00000230113.3; RP4-763G1.2-001; OTTHUMT00000025987.1; NONHSAT003798
Alternative gene names: XLOC_000236; linc-GADD45A; ENSG00000235200; RP4-763G1.2; ENSG00000235200.1; OTTHUMG00000009373.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.714 non-coding 
CPAT coding probability 26.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01702:22 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IL12RB2-2:6
3.1 lnc-IL12RB2-2:6
4.0 lnc-IL12RB2-2:6
4.1 lnc-IL12RB2-2:6
5.0 lnc-IL12RB2-2:6
5.1 LINC01702:11
5.2 LINC01702:22