Transcript: LINC01705:3

Basic information

LNCipedia transcript ID: LINC01705:3 
HGNC Gene Symbol: LINC01705    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1705
Ensembl Gene ID: ENSG00000232679
Ensembl Transcript ID: ENST00000438158
Location (hg19): chr1:222215047-222238105
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 562 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000740; ENST00000438158; ENST00000438158.1; RP11-400N13.3-001; OTTHUMT00000091113.1; NONHSAT009653
Alternative gene names: XLOC_001215; linc-DUSP10-2; ENSG00000232679; RP11-400N13.3; ENSG00000232679.1; OTTHUMG00000037425.1; LINC01705


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -77.2904 non-coding 
CPAT coding probability 3.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01705:3 no no no no

Available literature

  1. Wang (2018), Identification of differential expression lncRNAs in gastric cancer using transcriptome sequencing and bioinformatics analyses., Mol Med Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DUSP10-4:1
3.1 lnc-DUSP10-4:1
4.0 lnc-DUSP10-4:1
4.1 lnc-DUSP10-4:1
5.0 lnc-DUSP10-4:1
5.1 LINC01705:2
5.2 LINC01705:3