Transcript: LINC01711:3

Basic information

LNCipedia transcript ID: LINC01711:3 
HGNC Gene Symbol: LINC01711    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1711
Ensembl Gene ID: ENSG00000268941
Ensembl Transcript ID: ENST00000598340
RefSeq ID: NR_125359
Location (hg19): chr20:57209828-57210794
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 967 bp
Exons: 1
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_125359; ENST00000598340.2; NR_125359.1
Alternative gene names: ENSG00000268941.2; RP5-907D15.4; LINC01711; LOC79160


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -139.1076 non-coding 
CPAT coding probability 32.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01711:3 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-STX16-4:1
4.0 lnc-STX16-4:1
4.1 lnc-STX16-4:1
5.0 lnc-STX16-4:1
5.1 LINC01711:2
5.2 LINC01711:3