Transcript: LINC01715:18

Basic information

LNCipedia transcript ID: LINC01715:18 
HGNC Gene Symbol: LINC01715    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1715
Ensembl Gene ID: ENSG00000229388
Ensembl Transcript ID: ENST00000427804
Location (hg19): chr1:28972603-28975093
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 688 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427804; ENST00000427804.1; RP11-442N24__B.1-002; OTTHUMT00000010342.1; NONHSAT001986
Alternative gene names: ENSG00000229388; RP11-442N24__B.1; ENSG00000229388.1; OTTHUMG00000003649.1; LINC01715


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.3452 non-coding 
CPAT coding probability 4.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01715:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GMEB1-1:2
3.1 lnc-GMEB1-1:2
4.0 lnc-GMEB1-1:2
4.1 lnc-GMEB1-1:2
5.0 lnc-GMEB1-1:2
5.1 LINC01715:9
5.2 LINC01715:18