Transcript: LINC01716:5

Basic information

LNCipedia transcript ID: LINC01716:5 
HGNC Gene Symbol: LINC01716    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1716
Ensembl Gene ID: ENSG00000225657
Ensembl Transcript ID: ENST00000434176
RefSeq ID: NR_136537
Location (hg19): chr20:55152619-55171182
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 698 bp
Exons: 6
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00027958; ENST00000434176; ENST00000434176.1; RP5-843L14.1-001; OTTHUMT00000259432.1; NONHSAT080463; NR_136537.1
Alternative gene names: XLOC_013578; linc-TFAP2C-2; ENSG00000225657; RP5-843L14.1; ENSG00000225657.2; OTTHUMG00000032803.2; LINC01716; LOC105372682


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.7563 non-coding 
CPAT coding probability 1.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01716:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TFAP2C-2:1
3.1 lnc-TFAP2C-2:1
4.0 lnc-TFAP2C-2:1
4.1 lnc-TFAP2C-2:1
5.0 lnc-TFAP2C-2:1
5.1 LINC01716:2
5.2 LINC01716:5