Transcript: LINC01717:10

Basic information

LNCipedia transcript ID: LINC01717:10 
LNCipedia gene ID: LINC01717
Location (hg19): chr1:208902050-208910106
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1609 bp
Exons: 5
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00002225; NONHSAT009175
Alternative gene names: XLOC_000545; linc-LOC642587-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.5935 non-coding 
CPAT coding probability 0.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01717:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CAMK1G-5:3
3.1 lnc-CAMK1G-5:3
4.0 lnc-CAMK1G-5:3
4.1 lnc-CAMK1G-5:3
5.0 lnc-CAMK1G-5:3
5.1 LINC01717:4
5.2 LINC01717:10