Transcript: LINC01717:9

Basic information

LNCipedia transcript ID: LINC01717:9 
HGNC Gene Symbol: LINC01717    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1717
Ensembl Gene ID: ENSG00000232812
Ensembl Transcript ID: ENST00000415754
Location (hg19): chr1:208902033-208906529
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 527 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000375; ENST00000415754; ENST00000415754.1; RP11-459K23.2-001; OTTHUMT00000088025.1; NONHSAT009174
Alternative gene names: XLOC_000545; linc-LOC642587-4; ENSG00000232812; RP11-459K23.2; ENSG00000232812.1; OTTHUMG00000036136.1; LINC01717


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.5935 non-coding 
CPAT coding probability 0.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01717:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CAMK1G-5:2
3.1 lnc-CAMK1G-5:2
4.0 lnc-CAMK1G-5:2
4.1 lnc-CAMK1G-5:2
5.0 lnc-CAMK1G-5:2
5.1 LINC01717:3
5.2 LINC01717:9