Transcript: LINC01718:15

Basic information

LNCipedia transcript ID: LINC01718:15 
HGNC Gene Symbol: LINC01718    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1718
Ensembl Gene ID: ENSG00000229606
Ensembl Transcript ID: ENST00000441660
Location (hg19): chr20:59654196-59655235
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 391 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00027979; ENST00000441660; ENST00000441660.1; RP5-827L5.1-001; OTTHUMT00000079958.1
Alternative gene names: XLOC_013594; linc-CDH4-1; ENSG00000229606; RP5-827L5.1; ENSG00000229606.1; OTTHUMG00000032884.1; LINC01718


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01718:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDH4-2:3
3.1 lnc-CDH4-2:3
4.0 lnc-CDH4-2:3
4.1 lnc-CDH4-2:3
5.0 lnc-CDH4-2:3
5.1 LINC01718:7
5.2 LINC01718:15