Transcript: LINC01720:3

Basic information

LNCipedia transcript ID: LINC01720:3 
HGNC Gene Symbol: LINC01720    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1720
Ensembl Gene ID: ENSG00000231175
Ensembl Transcript ID: ENST00000413356
RefSeq ID: NR_033922
Location (hg19): chr1:190594020-190770788
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2216 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000413356.1; RP11-463J7.2-001; OTTHUMT00000086305.1; NONHSAT008508; NR_033922; NR_033922.1
Alternative gene names: ENSG00000231175.1; RP11-463J7.2; OTTHUMG00000035556.1; LINC01720; LOC440704


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.4475 non-coding 
CPAT coding probability 5.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01720:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RGS18-4:1
4.0 lnc-RGS18-4:1
4.1 lnc-RGS18-4:1
5.0 lnc-RGS18-4:1
5.1 LINC01720:2
5.2 LINC01720:3