Transcript: LINC01721:3

Basic information

LNCipedia transcript ID: LINC01721:3 
HGNC Gene Symbol: LINC01721    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1721
Ensembl Gene ID: ENSG00000230133
Ensembl Transcript ID: ENST00000457274
RefSeq ID: NR_040102
Location (hg19): chr20:24180403-24205224
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2376 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00027861; ENST00000457274; ENST00000457274.1; RP5-1100I6.2-001; OTTHUMT00000078370.1; NONHSAT079104; NR_040102; NR_040102.1
Alternative gene names: XLOC_013497; linc-TMEM90B-1; ENSG00000230133; RP5-1100I6.2; ENSG00000230133.1; OTTHUMG00000032098.1; FLJ33581; LINC01721


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.1665 non-coding 
CPAT coding probability 25.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01721:3 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SYNDIG1-2:1
3.1 lnc-SYNDIG1-2:1
4.0 lnc-SYNDIG1-2:1
4.1 lnc-SYNDIG1-2:1
5.0 lnc-SYNDIG1-2:1
5.1 LINC01721:2
5.2 LINC01721:3