Transcript: LINC01727:18

Basic information

LNCipedia transcript ID: LINC01727:18 
LNCipedia gene ID: LINC01727
RefSeq ID: NR_109880
Location (hg19): chr20:21550662-21596360
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 567 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_109880; NR_109880.1
Alternative gene names: LOC101929625


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -122.0186 non-coding 
CPAT coding probability 2.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01727:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PAX1-1:4
4.0 lnc-PAX1-1:4
4.1 lnc-PAX1-1:4
5.0 lnc-PAX1-1:4
5.1 LINC01727:6
5.2 LINC01727:18