Transcript: LINC01742:5

Basic information

LNCipedia transcript ID: LINC01742:5 
LNCipedia gene ID: LINC01742
Location (hg19): chr20:56578910-56579695
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 692 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT080529; FPKM1_group_19659_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.247 non-coding 
CPAT coding probability 0.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01742:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C20orf85-1:2
4.0 lnc-C20orf85-1:2
4.1 lnc-C20orf85-1:2
5.0 lnc-C20orf85-1:2
5.1 LINC01742:2
5.2 LINC01742:5