Transcript: LINC01747:11

Basic information

LNCipedia transcript ID: LINC01747:11 
HGNC Gene Symbol: LINC01747    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1747
Ensembl Gene ID: ENSG00000230400
Ensembl Transcript ID: ENST00000634603
Location (hg19): chr20:22649122-22665933
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1377 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000634603.1
Alternative gene names: ENSG00000230400.2; RP11-359G22.2; LINC01747


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -120.0654 non-coding 
CPAT coding probability 1.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01747:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-FOXA2-4:6
4.1 lnc-FOXA2-4:6
5.0 lnc-FOXA2-4:6
5.1 LINC01747:5
5.2 LINC01747:11