Transcript: LINC01771:16

Basic information

LNCipedia transcript ID: LINC01771:16 
HGNC Gene Symbol: LINC01771    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1771
Ensembl Gene ID: ENSG00000225675
Ensembl Transcript ID: ENST00000445039
RefSeq ID: NR_131923
Location (hg19): chr1:53793905-53802181
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 567 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000445039.2; NR_131923.1
Alternative gene names: ENSG00000225675.2; RP4-784A16.5; LINC01771; LOC105378732


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.6825 non-coding 
CPAT coding probability 14.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01771:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CPT2-7:3
4.0 lnc-CPT2-7:3
4.1 lnc-CPT2-7:3
5.0 lnc-CPT2-7:3
5.1 LINC01771:8
5.2 LINC01771:16