Transcript: LINC01777:13

Basic information

LNCipedia transcript ID: LINC01777:13 
HGNC Gene Symbol: LINC01777    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1777
Ensembl Gene ID: ENSG00000235054
Ensembl Transcript ID: ENST00000423197
Location (hg19): chr1:4472111-4484747
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2077 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000423197; ENST00000423197.1; RP5-1166F10.1-001; OTTHUMT00000001814.1; NONHSAT000577; ENST00000423197.2
Alternative gene names: ENSG00000235054; RP5-1166F10.1; ENSG00000235054.1; OTTHUMG00000000733.1; ENSG00000235054.3; LINC01777


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.3776 non-coding 
CPAT coding probability 9.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01777:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AJAP1-4:2
3.1 lnc-AJAP1-4:1
4.0 lnc-AJAP1-4:1
4.1 lnc-AJAP1-4:1
5.0 lnc-AJAP1-4:1
5.1 LINC01777:4
5.2 LINC01777:13