Transcript: LINC01778:14

Basic information

LNCipedia transcript ID: LINC01778:14 
HGNC Gene Symbol: LINC01778    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1778
Ensembl Gene ID: ENSG00000223382
Ensembl Transcript ID: ENST00000430320
Location (hg19): chr1:31297075-31307131
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1108 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT002065; ENST00000430320.3
Alternative gene names: ENSG00000223382.3; RP1-65J11.1; ENSG00000223382.4; RP5-1125N11.2; LINC01778


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -84.9277 non-coding 
CPAT coding probability 3.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01778:14 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZCCHC17-3:3
4.0 lnc-ZCCHC17-3:3
4.1 lnc-ZCCHC17-3:3
5.0 lnc-ZCCHC17-3:3
5.1 LINC01778:3
5.2 LINC01778:14