Transcript: LINC01783:9

Basic information

LNCipedia transcript ID: LINC01783:9 
HGNC Gene Symbol: LINC01783    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1783
Ensembl Gene ID: ENSG00000233421
Ensembl Transcript ID: ENST00000415386
Location (hg19): chr1:16860381-16862144
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1548 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000415386; ENST00000415386.2; RP5-875O13.1-001; OTTHUMT00000007045.1; NONHSAT001136
Alternative gene names: ENSG00000233421; RP5-875O13.1; ENSG00000233421.2; OTTHUMG00000002488.1; ENSG00000233421.3; U1; ENSG00000233421.4; LINC01783


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 30.0956 non-coding 
CPAT coding probability 4.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01783:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPATA21-1:1
3.1 lnc-SPATA21-1:1
4.0 lnc-SPATA21-1:1
4.1 lnc-SPATA21-1:1
5.0 lnc-SPATA21-1:1
5.1 LINC01783:5
5.2 LINC01783:9