Transcript: LINC01789:4

Basic information

LNCipedia transcript ID: LINC01789:4 
HGNC Gene Symbol: LINC01789    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1789
Ensembl Gene ID: ENSG00000229457
Ensembl Transcript ID: ENST00000443123
Location (hg19): chr2:107871147-107982329
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 860 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003360; ENST00000443123; ENST00000443123.1; AC006227.1-002; OTTHUMT00000330102.1; NONHSAT073056
Alternative gene names: XLOC_002250; linc-ST6GAL2-2; ENSG00000229457; AC006227.1; ENSG00000229457.1; OTTHUMG00000153205.2; LINC01789


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.6015 non-coding 
CPAT coding probability 0.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01789:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ST6GAL2-1:1
3.1 lnc-ST6GAL2-1:1
4.0 lnc-ST6GAL2-1:1
4.1 lnc-ST6GAL2-1:1
5.0 lnc-ST6GAL2-1:1
5.1 LINC01789:2
5.2 LINC01789:4