Transcript: LINC01798:18

Basic information

LNCipedia transcript ID: LINC01798:18 
LNCipedia gene ID: LINC01798
Location (hg19): chr2:66892907-66921094
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2398 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00003719; NONHSAT071234
Alternative gene names: XLOC_001508; linc-ETAA1-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.7007 non-coding 
CPAT coding probability 1.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01798:18 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MEIS1-3:2
3.1 lnc-MEIS1-3:2
4.0 lnc-MEIS1-3:2
4.1 lnc-MEIS1-3:2
5.0 lnc-MEIS1-3:2
5.1 LINC01798:4
5.2 LINC01798:18