Transcript: LINC01798:28

Basic information

LNCipedia transcript ID: LINC01798:28 
HGNC Gene Symbol: LINC01798    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1798
Ensembl Gene ID: ENSG00000232046
Ensembl Transcript ID: ENST00000412944
Location (hg19): chr2:66918578-66957289
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 528 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002921; ENST00000412944; ENST00000412944.1; AC007392.3-006; OTTHUMT00000328539.1; NONHSAT071239
Alternative gene names: XLOC_001508; linc-ETAA1-6; ENSG00000232046; AC007392.3; ENSG00000232046.1; OTTHUMG00000152838.2; ENSG00000232046.2; ENSG00000232046.6; LINC01798


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.2681 non-coding 
CPAT coding probability 27.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01798:28 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MEIS1-3:7
3.1 lnc-MEIS1-3:7
4.0 lnc-MEIS1-3:7
4.1 lnc-MEIS1-3:7
5.0 lnc-MEIS1-3:7
5.1 LINC01798:14
5.2 LINC01798:28