Transcript: LINC01808:11

Basic information

LNCipedia transcript ID: LINC01808:11 
LNCipedia gene ID: LINC01808
Location (hg19): chr2:19675211-19688611
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 754 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: TCONS_00002842; ENST00000450628; ENST00000450628.1; AC010096.2-001; OTTHUMT00000323866.1; NONHSAT069397
Alternative gene names: XLOC_001377; linc-RHOB-5; ENSG00000237992; AC010096.2; ENSG00000237992.1; OTTHUMG00000151774.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -145.3074 non-coding 
CPAT coding probability 7.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01808:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RHOB-4:1
3.1 lnc-RHOB-6:1
4.0 lnc-RHOB-6:1
4.1 lnc-RHOB-6:1
5.0 lnc-RHOB-6:1
5.1 LINC01808:6
5.2 LINC01808:11